PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03479.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 139aa    MW: 15356 Da    PI: 8.4721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03479.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-112072254
                             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54
                             ++ ++ +rk++NR +ArrsR RK++ ++ L+  v  L  eN++    +   ++
  Rsa1.0_03479.1_g00004.1 20 SDERKRKRKESNRDSARRSRMRKQKHLDDLTAQVTHLRDENSKIVASITVTRQ 72
                             5667899**********************************987766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-111874No hitNo description
SMARTSM003385.6E-181983IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8982184IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-122375No hitNo description
PfamPF001703.7E-92371IPR004827Basic-leucine zipper domain
CDDcd147024.72E-202474No hitNo description
PROSITE patternPS0003602641IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSPTSGNCS SGIQNYGSES DERKRKRKES NRDSARRSRM RKQKHLDDLT AQVTHLRDEN  60
SKIVASITVT RQHYVTIETE NSVLRAQFLE LDQRLDSLNE IVETAGGFWM ETGQGGGGAI  120
SYGRGGGGFY DGVMNPLSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227RKRKRK
22228RKRKRKE
32243RKRKRKESNRDSARRSRMRKQK
43542RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128098.13e-72PREDICTED: ocs element-binding factor 1-like
RefseqXP_013718541.13e-72PREDICTED: ocs element-binding factor 1-like
SwissprotQ9LZP86e-25BZP53_ARATH; bZIP transcription factor 53
TrEMBLA0A078HNT78e-77A0A078HNT7_BRANA; BnaA02g17180D protein
STRINGBra008192.1-P8e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-54basic leucine-zipper 44